SOM cluster: 2008

Cluster Hypersensitivity Profile


Genomic Location Trend

These plots show the distribution of the DHS sites surrounding the Transcript Start Site of the nearest gene.

Stats

Number of sites: 4871
Promoter: 2%
CpG-Island: 0%
Conserved: 51%

Enriched Motifs & Matches

Match Detail: [Jaspar]
Sites: 57/100 | e-val: 5.3e-28
Factore-val(match)DB
Foxq10.0000078505JASPAR
Foxd30.000016512JASPAR
MEF2A0.000081311JASPAR
Pax40.00042542JASPAR
Pou5f10.00053962JASPAR
Sites: 41/100 | e-val: 0.000000000016
Factore-val(match)DB
TAL1::TCF30.000024374JASPAR
HNF1A0.00032496JASPAR
ARID3A0.001574JASPAR
Lhx30.0020583JASPAR
Foxd30.0029096JASPAR

BED file downloads

Download top of 4871 regions.

Top 10 Example Regions

LocationGene LinkDist.
chr18: 13645740-13645890RN7SL362P38.91
chrX: 10186520-10186670CLCN442.92
chr3: 152953160-152953310RAP2B44.59
chr9: 110584580-110584730RN7SL659P50.33
chr3: 46122540-46122690XCR150.68
chr8: 49705885-49706035RP11-770E5.154.27
chr3: 13597740-13597890FBLN254.37
chr3: 155206580-155206730PLCH1-AS157.27
chr1: 31159480-31159630MATN1-AS158.18
chr13: 111770325-111770475ARHGEF7-IT158.38
View top connections.

Other

CodePlot