SOM cluster: 192

Cluster Hypersensitivity Profile


Genomic Location Trend

These plots show the distribution of the DHS sites surrounding the Transcript Start Site of the nearest gene.

Stats

Number of sites: 161
Promoter: 43%
CpG-Island: 59%
Conserved: 66%

Enriched Motifs & Matches

Match Detail: [Jaspar]
Sites: 83/100 | e-val: 0
Factore-val(match)DB
SP10.0000000083867JASPAR
Klf40.00000079596JASPAR
PLAG10.000026688JASPAR
TFAP2A0.0051626JASPAR
RREB10.0067535JASPAR
Sites: 35/100 | e-val: 0.000000000000052
Factore-val(match)DB
SP10.000000000037182JASPAR
Klf40.000000014382JASPAR
Zfx0.0060516JASPAR
RREB10.0083783JASPAR
Egr10.0090893JASPAR

BED file downloads

Download top of 161 regions.

Top 10 Example Regions

LocationGene LinkDist.
chr4: 87857320-87857470AFF150.51
chr4: 87857320-87857470RP11-397E7.150.51
chr13: 50656780-50656930DLEU152.99
chr8: 87520785-87520935RP11-298P6.553.11
chr14: 24036940-24037090AP1G256.26
chr14: 24036940-24037090RP11-66N24.356.26
chr14: 24036940-24037090NGDN56.26
chr18: 29523340-29523490RNF12556.58
chr18: 29523340-29523490TRAPPC856.58
chr6: 33244800-33244950RPS1860.58
View top connections.

Other

CodePlot