SOM cluster: 3

Cluster Hypersensitivity Profile


Genomic Location Trend

These plots show the distribution of the DHS sites surrounding the Transcript Start Site of the nearest gene.

Stats

Number of sites: 1198
Promoter: 0%
CpG-Island: 0%
Conserved: 27%

Enriched Motifs & Matches

Match Detail: [Jaspar]
Sites: 19/100 | e-val: 0.0019
Factore-val(match)DB
Pou5f12.2204e-16JASPAR
Sox20.0000000000000084377JASPAR
SOX100.0016128JASPAR
SOX90.0042641JASPAR
Pdx10.0070539JASPAR

BED file downloads

Download top of 1198 regions.

Top 10 Example Regions

LocationGene LinkDist.
chr1: 203965860-203966010SOX1335.49
chr6: 125849880-125850030RP11-624M8.140.5
chr12: 9064560-9064710PHC142.71
chr12: 9064560-9064710KLRG142.71
chr12: 9064560-9064710A2ML1-AS242.71
chr11: 131123140-131123290AP002856.547.98
chr10: 21762180-21762330SKIDA149.24
chr2: 152265400-152265550RIF153.82
chr5: 141252500-141252650AC005740.553.84
chr1: 230563840-230563990PGBD555.67
View top connections.

Other

CodePlot